FastQCFastQC Report
Mon 19 Sep 2022
GP_LIG_1_read1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_LIG_1_read1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4543708
Sequences flagged as poor quality0
Sequence length150
%GC68

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTATTGCATCTCGTAT2104074.630733312968175TruSeq Adapter, Index 8 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTATTGCATCGCGTAT1275582.8073546979691475TruSeq Adapter, Index 8 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTATTGCATCTCGTTT138640.30512524132272584TruSeq Adapter, Index 8 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTATTGCATCGCGTTT89920.19790004111179682TruSeq Adapter, Index 8 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTATTGCATCTCGGAT76260.16783648949272267TruSeq Adapter, Index 8 (97% over 36bp)
GAATCGGAAGAGCACACGTCTGAACTCCAGTCACACTATTGCATCTCGTA73450.16165211320797904TruSeq Adapter, Index 8 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTATTGCATCGCGGAT57800.12720887873956688TruSeq Adapter, Index 8 (97% over 36bp)

[FAIL]Adapter Content

Adapter graph

GP_LIG_1_read2.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_LIG_1_read2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_LIG_1_read2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4543708
Sequences flagged as poor quality0
Sequence length150
%GC67

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG275570.6064870365789351No Hit

[FAIL]Adapter Content

Adapter graph

GP_LIG_2_read1.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_LIG_2_read1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_LIG_2_read1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13141442
Sequences flagged as poor quality0
Sequence length150
%GC69

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTACGATTCATCTCGTAT160218312.191835568729823TruSeq Adapter, Index 7 (97% over 35bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTACGATTCATCGCGTAT10594708.0620528553868TruSeq Adapter, Index 7 (97% over 35bp)
GAATCGGAAGAGCACACGTCTGAACTCCAGTCACTACGATTCATCTCGTA466930.3553110838216993TruSeq Adapter, Index 10 (97% over 35bp)
GAATCGGAAGAGCACACGTCTGAACTCCAGTCACTACGATTCATCGCGTA302170.22993671470756405TruSeq Adapter, Index 10 (97% over 35bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTACGATTCATCTCGTATG131480.10004990319935969TruSeq Adapter, Index 7 (97% over 34bp)

[FAIL]Adapter Content

Adapter graph

GP_LIG_2_read2.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_LIG_2_read2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_LIG_2_read2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13141442
Sequences flagged as poor quality0
Sequence length150
%GC71

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1962521.4933825374719152No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG194510.14801267623446498No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT135950.10345135640365799No Hit

[FAIL]Adapter Content

Adapter graph

GP_LIG_3_read1.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_LIG_3_read1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_LIG_3_read1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5019203
Sequences flagged as poor quality0
Sequence length150
%GC70

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGCAGTGGATCTCGTAT1143812.278867780402586TruSeq Adapter, Index 11 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGCAGTGGATCGCGTAT603101.201585191911943TruSeq Adapter, Index 11 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGCAGTGGATCTCGTTT244160.4864517334724258TruSeq Adapter, Index 11 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGCAGTGGATCTCGGAT185880.3703376811019598TruSeq Adapter, Index 11 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGCAGTGGATCGCGTTT138000.2749440498820231TruSeq Adapter, Index 11 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGCAGTGGATCGCGGAT110720.22059279132563475TruSeq Adapter, Index 11 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGCAGTGGATCTCGGTT82980.165325052602973TruSeq Adapter, Index 11 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGCAGTGGATCGCGGTT56940.11344430579914778TruSeq Adapter, Index 11 (97% over 36bp)

[FAIL]Adapter Content

Adapter graph

GP_LIG_3_read2.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_LIG_3_read2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_LIG_3_read2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5019203
Sequences flagged as poor quality0
Sequence length150
%GC66

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG199900.39827040269142333No Hit

[FAIL]Adapter Content

Adapter graph

GP_LIG_4_read1.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_LIG_4_read1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_LIG_4_read1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16087830
Sequences flagged as poor quality0
Sequence length150
%GC71

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGCGAGGAATCTCGGTT1845621.147215006623019TruSeq Adapter, Index 11 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGCGAGGAATCGCGGTT950360.5907322491597686TruSeq Adapter, Index 11 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGCGAGGAATCTCGGGT834120.5184788750254075TruSeq Adapter, Index 11 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGCGAGGAATCGCGGGT589670.36653171993985517TruSeq Adapter, Index 11 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGCGAGGAATCTCGTTT477480.29679577668336876TruSeq Adapter, Index 11 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGCGAGGAATCGCGTTT228620.14210741908635285TruSeq Adapter, Index 11 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGCGAGGAATCTCGGAT206110.1281154761083378TruSeq Adapter, Index 11 (97% over 36bp)

[FAIL]Adapter Content

Adapter graph

GP_LIG_4_read2.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_LIG_4_read2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_LIG_4_read2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16087830
Sequences flagged as poor quality0
Sequence length150
%GC66

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG529690.3292488794324654No Hit

[FAIL]Adapter Content

Adapter graph

GP_LIG_5_read1.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_LIG_5_read1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_LIG_5_read1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5872884
Sequences flagged as poor quality0
Sequence length150
%GC71

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACGCCACAATCTCGGTT817071.3912585366916834TruSeq Adapter, Index 15 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACGCCACAATCGCGGTT390590.6650735822468143TruSeq Adapter, Index 15 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACGCCACAATCTCGGGT355710.6056819783942609TruSeq Adapter, Index 15 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACGCCACAATCTCGTTT258450.4400733949453114TruSeq Adapter, Index 15 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACGCCACAATCGCGGGT226460.3856027123982016TruSeq Adapter, Index 15 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACGCCACAATCGCGTTT118890.20243886989765167TruSeq Adapter, Index 15 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACGCCACAATCTCGGAT113770.19372083630461628TruSeq Adapter, Index 15 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACGCCACAATCTCGTGT86470.14723600874800183TruSeq Adapter, Index 15 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACGCCACAATCTCGTAT68820.11718263122513572TruSeq Adapter, Index 15 (97% over 36bp)

[FAIL]Adapter Content

Adapter graph

GP_LIG_5_read2.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_LIG_5_read2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_LIG_5_read2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5872884
Sequences flagged as poor quality0
Sequence length150
%GC67

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG287610.48972532064314567No Hit

[FAIL]Adapter Content

Adapter graph

GP_LIG_6_read1.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_LIG_6_read1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_LIG_6_read1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17287587
Sequences flagged as poor quality0
Sequence length150
%GC70

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTCGGTCATCTCGTAT8355874.833450729705655TruSeq Adapter, Index 27 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTCGGTCATCGCGTAT6236573.607542220901043TruSeq Adapter, Index 27 (97% over 37bp)
GAATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTCGGTCATCTCGTA284950.16482925002778004TruSeq Adapter, Index 12 (97% over 36bp)
GAATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTCGGTCATCGCGTA228680.1322798838264704TruSeq Adapter, Index 12 (97% over 36bp)

[FAIL]Adapter Content

Adapter graph

GP_LIG_6_read2.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_LIG_6_read2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_LIG_6_read2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17287587
Sequences flagged as poor quality0
Sequence length150
%GC67

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1170030.6768035353921864No Hit

[FAIL]Adapter Content

Adapter graph

GP_LIG_7_read1.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_LIG_7_read1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_LIG_7_read1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5939440
Sequences flagged as poor quality0
Sequence length150
%GC69

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACGGAGGTATCTCGTAT1041481.7534986463370286TruSeq Adapter, Index 25 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACGGAGGTATCGCGTAT711431.197806527214687TruSeq Adapter, Index 25 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACGGAGGTATCTCGTTT61190.10302318063655833TruSeq Adapter, Index 25 (97% over 38bp)

[FAIL]Adapter Content

Adapter graph

GP_LIG_7_read2.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_LIG_7_read2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_LIG_7_read2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5939440
Sequences flagged as poor quality0
Sequence length150
%GC66

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG187070.31496235335317807No Hit

[FAIL]Adapter Content

Adapter graph

GP_LIG_8_read1.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_LIG_8_read1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_LIG_8_read1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17498828
Sequences flagged as poor quality0
Sequence length150
%GC68

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGAATCAGATCTCGTAT5471993.1270608523039374TruSeq Adapter, Index 2 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGAATCAGATCGCGTAT2144851.2257106590224214TruSeq Adapter, Index 2 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGAATCAGATCTCGGAT640420.36597879583706977TruSeq Adapter, Index 2 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGAATCAGATCTCGTTT581900.33253655616250416TruSeq Adapter, Index 2 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGAATCAGATCGCGGAT300230.17157149038781339TruSeq Adapter, Index 2 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGAATCAGATCGCGTTT247120.14122088633593063TruSeq Adapter, Index 2 (97% over 36bp)
GAATCGGAAGAGCACACGTCTGAACTCCAGTCACAGAATCAGATCTCGTA177140.10122963663623645TruSeq Adapter, Index 13 (97% over 35bp)

[FAIL]Adapter Content

Adapter graph

GP_LIG_8_read2.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_LIG_8_read2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_LIG_8_read2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17498828
Sequences flagged as poor quality0
Sequence length150
%GC67

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG789410.45112164083217454No Hit

[FAIL]Adapter Content

Adapter graph

GP_PCR_1_read1.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_PCR_1_read1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_PCR_1_read1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4415432
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

GP_PCR_1_read2.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_PCR_1_read2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_PCR_1_read2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4415432
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTGCTGCAAGGCGATTAAGTTGGGTAACGCCAGGGTTTTCCCAGTCAC425246896.30921730874805No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46330.1049274453779381No Hit

[FAIL]Adapter Content

Adapter graph

GP_PCR_2_read1.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_PCR_2_read1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_PCR_2_read1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12697763
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

GP_PCR_2_read2.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_PCR_2_read2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_PCR_2_read2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12697763
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTGCTGCAAGGCGATTAAGTTGGGTAACGCCAGGGTTTTCCCAGTCAC1227473496.66847617174773No Hit
ATGTGCTGCAAGGCGAGTAAGTTGGGTAACGCCAGGGTTTTCCCAGTCAC195170.15370423908526248No Hit

[FAIL]Adapter Content

Adapter graph

GP_PCR_3_read1.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_PCR_3_read1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_PCR_3_read1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5434358
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

GP_PCR_3_read2.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_PCR_3_read2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_PCR_3_read2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5434358
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTGCTGCAAGGCGATTAAGTTGGGTAACGCCAGGGTTTTCCCAGTCAC523698096.36796103605982No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57790.10634190828061015No Hit
ATGTGCTGCAAGGCGATTAAGTTGGGTAACGCCAGGGTTTCCCAGTCACG56150.10332407250313652No Hit

[FAIL]Adapter Content

Adapter graph

GP_PCR_4_read1.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_PCR_4_read1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_PCR_4_read1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14595572
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

GP_PCR_4_read2.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_PCR_4_read2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_PCR_4_read2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14595572
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTGCTGCAAGGCGATTAAGTTGGGTAACGCCAGGGTTTTCCCAGTCAC1397105095.72115433365681No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG154010.105518303770486No Hit

[FAIL]Adapter Content

Adapter graph

GP_PCR_5_read1.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_PCR_5_read1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_PCR_5_read1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4202038
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

GP_PCR_5_read2.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_PCR_5_read2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_PCR_5_read2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4202038
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTGCTGCAAGGCGATTAAGTTGGGTAACGCCAGGGTTTTCCCAGTCAC404471496.25600720412334No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46200.10994664969712316No Hit
ATGTGCTGCAAGGCGAGTAAGTTGGGTAACGCCAGGGTTTTCCCAGTCAC45310.10782862982200543No Hit

[FAIL]Adapter Content

Adapter graph

GP_PCR_6_read1.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_PCR_6_read1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_PCR_6_read1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12608135
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

GP_PCR_6_read2.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_PCR_6_read2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_PCR_6_read2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12608135
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTGCTGCAAGGCGATTAAGTTGGGTAACGCCAGGGTTTTCCCAGTCAC1214959896.36316552765336No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG132800.10532882143155986No Hit

[FAIL]Adapter Content

Adapter graph

GP_PCR_7_read1.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_PCR_7_read1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_PCR_7_read1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5542451
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

GP_PCR_7_read2.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_PCR_7_read2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_PCR_7_read2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5542451
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTGCTGCAAGGCGATTAAGTTGGGTAACGCCAGGGTTTTCCCAGTCAC533490096.25524880598854No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62100.11204429231760461No Hit
ATGTGCTGCAAGGCGATTAAGTTGGGTAACGCCAGGGTTTCCCAGTCACG57330.10343799160335383No Hit

[FAIL]Adapter Content

Adapter graph

GP_PCR_8_read1.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_PCR_8_read1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_PCR_8_read1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14906452
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

GP_PCR_8_read2.fastq.gz FastQC Report
FastQCFastQC Report
Mon 19 Sep 2022
GP_PCR_8_read2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameGP_PCR_8_read2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14906452
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTGCTGCAAGGCGATTAAGTTGGGTAACGCCAGGGTTTTCCCAGTCAC1426916595.72475730643349No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG162850.1092479954317768No Hit

[FAIL]Adapter Content

Adapter graph